PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05723_BGI-A2_v1.0
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 530aa    MW: 59569 Da    PI: 9.4095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05723_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-12353397554
                                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 h + Er+RR+++N++f  Lr+llP+      +K +Ka++L+ A eY+ sL
  Cotton_A_05723_BGI-A2_v1.0 353 HMMSERKRREKLNESFVALRSLLPSG-----TKRDKASVLTTAREYLVSL 397
                                 8899*********************8.....8**************9777 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.11348397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-11348401No hitNo description
SuperFamilySSF474599.95E-17349417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-14352415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9353397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.0E-12354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MDAIFNLDEA SRAEFLNLLM QSTCCSYICL WSYSFLQQAN CLIGLDGCCS EENSQALGLF  60
LEYKQLIFRL ENDKYGQIYI FFFLGGGGFA FKNNQPYIEL RELELQNRAF HETQRQFYRV  120
IKIKCKFYIT KELTTAVFMA CRSGEIELGS SSMVQLNMEM EMRSFFSEDQ LPQSTNQNRP  180
SSSSSSLRSL STSSPDSSLI FTVPTTHEPA PSSLQQAAIT PSSINDPRRA MQAFSQTRSN  240
IPLPTLESEN AAMTRAILAV LTSPSSSSSS SSTPFHRNQS LPYNNYRLNP KASAFKRYAT  300
GLGAGPATTP ARASLRAQAM MKRAILFYRK FNLARREQLL RSRPGPTSNQ LHHMMSERKR  360
REKLNESFVA LRSLLPSGTK RDKASVLTTA REYLVSLKAQ ILELNRQKQL LEAQILPSKG  420
GAAAIEVNDP SNERVNVRVI PVPESTSEER IADLRVTVRG ERPIVDILIH LLEFLKLDRN  480
VSLMSIEANT GVSEFGSVNL VSLRLRIKGD GWDESTFQEA VRRLITDLAQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1356361ERKRRE
2357362RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012476697.10.0PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBLA0A0D2QJ470.0A0A0D2QJ47_G
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-61bHLH family protein